Mark DePristo 9b0ab4e941 Cleanup IndependentAllelesDiploidExactAFCalc ... -- Remove capability to truncate genotype likelihoods -- this wasn't used and isn't really useful after all -- Added lots of contracts and docs, still more to come. -- Created a default makeMaxLikelihoods function in ReferenceDiploidExactAFCalc and DiploidExactAFCalc so that multiple subclasses don't just do the default thing -- Generalized reference bi-allelic model in IndependentAllelesDiploidExactAFCalc so that in principle any bi-allelic reference model can be used.		2012-10-16 08:11:06 -04:00
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src/org/broadinstitute/sting	Removing ConstrainedAFCalculationModel; AFCalcPerformanceTest	2012-10-16 08:11:06 -04:00
test/org/broadinstitute/sting/gatk/walkers	Cleanup IndependentAllelesDiploidExactAFCalc	2012-10-16 08:11:06 -04:00