hanna 2f8057bf24 Cleanup for multithreading memory leak during integration tests...unregister MXBean at end ... of traversal to avoid holding a reference to the microscheduler, which holds a reference to the engine, which in turn holds a reference to the walker, which itself holds a reference to all the data aggregated during the course of the traversal. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4594 348d0f76-0448-11de-a6fe-93d51630548a		2010-10-28 18:37:42 +00:00
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alignment	all fixed..thanks Matt!	2010-09-10 06:18:59 +00:00
commandline	Get rid of the static cache of ArgumentTypeDescriptors by making them an integral part of the	2010-10-27 19:44:55 +00:00
datasources/pipeline	Updated from SnakeYAML 1.6 to 1.7.	2010-09-22 19:47:49 +00:00
gatk	Cleanup for multithreading memory leak during integration tests...unregister MXBean at end	2010-10-28 18:37:42 +00:00
oneoffprojects/walkers	The tribble indexes are now updated with correct sequence lengths for each contig they have in their sequence dictionary. Also clean-up in the RMD track builder.	2010-09-21 18:21:22 +00:00
playground/gatk/walkers	Recent changes to the build system make the build system complain loudly about	2010-09-24 22:09:12 +00:00
utils	High performance version of standard vcf writer. New general static Tribble class for common constants, including general .idx constant and functions to get standard index name for a given file.	2010-10-08 19:53:21 +00:00
BaseTest.java	Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality.	2010-10-06 18:29:56 +00:00
WalkerTest.java	Parallelized VariantEval. Refactored output to support parallel output style. Minor improvements to testing framework to enable easy executeTestParallel to run -nt 1 and -nt 4 by default.	2010-10-26 20:21:38 +00:00