gatk3的最后一个经典版本3.8

Mark DePristo 9a0dda71d4 BCF2 optimizations ... -- All low-level reads throw IOException instead of catching it directly. This allows us to not try/catch in readByte, improving performance by 5% or so -- Optimize encodeTypeDescriptor with final variables. Avoid using Math.min instead do inline comparison -- Inlined willOverflow directly in its single use		2012-08-09 16:36:18 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Merge branch 'master' of ssh://gsa2.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-08-09 16:31:06 -04:00
public	BCF2 optimizations	2012-08-09 16:36:18 -04:00
settings	Removed Categories.	2012-07-25 13:46:24 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Remove reference dependence in BCF2Codec	2012-07-25 08:56:38 -04:00
ivy.xml	V1 of tool to visualize the quality score information in the context covariates	2012-07-31 08:11:02 -04:00