chartl 9f03f09cc9 Changes to V2 pipeline and libraries. AB dropped. Cleaning enabled. Project name now properly propagated to intermediate files (instead of the string repr of the object). Indel mask is now expanded prior to filtering at indels. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4769 348d0f76-0448-11de-a6fe-93d51630548a		2010-12-01 18:55:48 +00:00
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RefineGenotypesAndMerge.q	Commit for Ryan	2010-10-05 19:04:10 +00:00
fullCallingPipelineV2.q	Changes to V2 pipeline and libraries. AB dropped. Cleaning enabled. Project name now properly propagated to intermediate files (instead of the string repr of the object). Indel mask is now expanded prior to filtering at indels.	2010-12-01 18:55:48 +00:00
omni_qc.q	Bug fix to GenotypeConcordance. AC metrics get instantiated based on number of eval samples; if Comp has more samples, we can see AC indeces outside the bounds of the array.	2010-11-03 19:23:03 +00:00
private_mutations.q	Sometimes, inputs are really outputs in disguise.	2010-11-05 19:51:16 +00:00