Eric Banks 998ed8fff3 Bug fix to deal with VCF records that don't have GTs. While in there, optimized a bunch of related functions (including removing a copy of the method calculateChromosomeCounts(); why did we have 2 copies? very dangerous).		2012-02-27 14:56:10 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Bug fix to deal with VCF records that don't have GTs. While in there, optimized a bunch of related functions (including removing a copy of the method calculateChromosomeCounts(); why did we have 2 copies? very dangerous).	2012-02-27 14:56:10 -05:00
test	Updating integration tests now that standard annotations support multiple alleles	2012-02-27 11:32:26 -05:00