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gatk-3.8/public/java/src/org/broadinstitute/sting/utils/help
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David Roazen a536e1da84 Move some VCF/VariantContext methods back to the GATK based on feedback 
-Moved some of the more specialized / complex VariantContext and VCF utility
 methods back to the GATK.

-Due to this re-shuffling, was able to return things like the Pair class back
 to the GATK as well.
 		2013-01-29 16:56:55 -05:00
..
ApplicationDetails.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
DocumentedGATKFeature.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
DocumentedGATKFeatureHandler.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
DocumentedGATKFeatureObject.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
ForumAPIUtils.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
ForumDiscussion.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
GATKDocUtils.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
GATKDocWorkUnit.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
GATKDoclet.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
GenericDocumentationHandler.java Move some VCF/VariantContext methods back to the GATK based on feedback 2013-01-29 16:56:55 -05:00
HelpConstants.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
HelpFormatter.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
HelpUtils.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
ResourceBundleExtractorDoclet.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00