Mark DePristo 91f3204534 VCF/BCF writers once again automatically write out no-call genotypes for samples in the VCFHeader but not in the VC itself ... -- Turns out this was consuming 30% of the UG runtime, and causing problems elsewhere. -- Removed addMissingSamples from VariantcontextUtils, and calls to it -- Updated VCF / BCF writers to automatically write out a diploid no call for missing samples -- Added unit tests for this behavior in VariantContextWritersUnitTest		2012-09-12 06:46:26 -04:00
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net/sf	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00
org/broadinstitute/sting	VCF/BCF writers once again automatically write out no-call genotypes for samples in the VCFHeader but not in the VC itself	2012-09-12 06:46:26 -04:00