gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio 98ffcf6833 Get gVCF to work without --dontTrimActiveRegions Story: https://www.pivotaltracker.com/story/show/65048706 https://www.pivotaltracker.com/story/show/65116908 Changes: ActiveRegionTrimmer in now an argument collection and it returns not only the trimmed down active region but also the non-variant containing flanking regions HaplotypeCaller code has been simplified significantly pushing some functionality two other classes like ActiveRegion and AssemblyResultSet. Fixed a problem with the way the trimming was done causing some gVCF non-variant records no have conservative 0,0,0 PLs		2014-02-05 22:50:45 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Get gVCF to work without --dontTrimActiveRegions	2014-02-05 22:50:45 -05:00
public	Get gVCF to work without --dontTrimActiveRegions	2014-02-05 22:50:45 -05:00
settings	Switched commited dependency repository from ivy to maven.	2014-02-03 13:50:46 -05:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Minor ant-bridge.sh changes	2014-02-03 13:50:47 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Distinct failsafe summary reports, just like invoker report directories.	2014-02-03 13:50:47 -05:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/