hanna 98c268483e Fixed issues with the integration tests: ... 1) sam-jdk apparently no longer supports custom tags with type int[] values. 2) BAM output for indel cleaner integration test changed in a way that's so subtle it can't be seen after converting the output to .sam. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2439 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-23 23:12:22 +00:00
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broadinstitute/sting	Fixed issues with the integration tests:	2009-12-23 23:12:22 +00:00