weisburd 984c51efd3 Updated to use Tribble-based GATKFeature instead of TabularROD ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3390 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-19 03:42:12 +00:00
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alignment	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had	2010-04-20 15:26:32 +00:00
analyzecovariates	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had	2010-04-20 15:26:32 +00:00
commandline	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had	2010-04-20 15:26:32 +00:00
gatk	Removed AnnotatorROD which has been ported to Tribble	2010-05-19 03:39:34 +00:00
oneoffprojects	Changes to DepthOfCoverage (JIRA items) and added back an integration test to cover it. Alterations to the design file generator to output all transcripts (rather than choosing one at random).	2010-05-17 17:23:00 +00:00
playground	Updated to use Tribble-based GATKFeature instead of TabularROD	2010-05-19 03:42:12 +00:00
utils	Added fast split(str, delimiter) methodf	2010-05-19 03:37:26 +00:00