jmaguire 2ed63fe17c a bunch of changes that support pools. ... they don't appear to break single sample: Allele Frequency Metrics (LOD >= 5) ------------------------------------------------- Total loci : 9000 Total called with confidence : 8138 (90.42%) Number of variants : 11 (0.14%) (1/739) Fraction of variant sites in dbSNP : 81.82% git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@192 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-25 18:52:42 +00:00
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src/org/broadinstitute/sting	a bunch of changes that support pools.	2009-03-25 18:52:42 +00:00
test/org/broadinstitute/sting/utils/cmdLine	added our first junit test, for the argument parser	2009-03-24 21:14:30 +00:00