Eric Banks 9826192854 Added contracts, docs, and tests for several methods in AlignmentUtils. There are over 74K tests being run now for this class! ... * AlignmentUtils.getMismatchCount() * AlignmentUtils.calcAlignmentByteArrayOffset() * AlignmentUtils.readToAlignmentByteArray(). * AlignmentUtils.leftAlignIndel()		2013-02-07 13:04:24 -05:00
..
commandline	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
gatk	Final cleanup and unit testing for GATKRunReport	2013-02-02 15:06:56 -05:00
jna	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
utils	Added contracts, docs, and tests for several methods in AlignmentUtils. There are over 74K tests being run now for this class!	2013-02-07 13:04:24 -05:00
BaseTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
ExampleToCopyUnitTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
MD5DB.java	Encrypt GATK AWS keys using the GATK private key, and decrypt as needed as a resource when uploading to AWS logs	2013-01-30 16:42:23 -05:00
MD5Mismatch.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
StingTextReporter.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
TestNGTestTransformer.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
WalkerTest.java	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00