gatk3的最后一个经典版本3.8

Eric Banks 9826192854 Added contracts, docs, and tests for several methods in AlignmentUtils. There are over 74K tests being run now for this class! ... * AlignmentUtils.getMismatchCount() * AlignmentUtils.calcAlignmentByteArrayOffset() * AlignmentUtils.readToAlignmentByteArray(). * AlignmentUtils.leftAlignIndel()		2013-02-07 13:04:24 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	Added contracts, docs, and tests for several methods in AlignmentUtils. There are over 74K tests being run now for this class!	2013-02-07 13:04:24 -05:00
public	Added contracts, docs, and tests for several methods in AlignmentUtils. There are over 74K tests being run now for this class!	2013-02-07 13:04:24 -05:00
settings	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00