Mark DePristo 982192e2e4 MD5DB for integrationtest management now writes out a md5mismatches files for clean analysis ... -- This file is in integrationtests/md5mismatches.txt, and looks like: expected observed test 7fd0d0c2d1af3b16378339c181e40611 2339d841d3c3c7233ebba9a6ace895fd test BeagleOutputToVCF 43865f3f0d975ee2c5912b31393842f8 1b9c4734274edd3142a05033e520beac testBeagleChangesSitesToRef daead9bfab1a5df72c5e3a239366118e 27be14f9fc951c4e714b4540b045c2df testDiffObjects:master=/local/dev/depristo/itest/public/testdata/diffTestMaster.vcf,test=/local/dev/depristo/itest/public/testdata/diffTestTest.vcf,md5=daead9bfab1a5df72c5e3a239366118e -- Associated cleanup with making md5db an instantiated object, rather than a bunch of static methods		2012-06-14 16:42:27 -04:00
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datasources	GATK tests use public/testdata not /humgen/ as much as possible	2012-05-24 10:58:58 -04:00
downsampling	Make downsampler classes themselves generic (instead of just the Downsampler interface)	2012-06-13 16:43:39 -04:00
executive	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
filters	GATK tests use public/testdata not /humgen/ as much as possible	2012-05-24 10:58:58 -04:00
iterators	Removing extended event related unit tests	2012-04-02 14:40:36 -04:00
refdata	Bugfixes and testdata cleanup	2012-05-24 13:26:05 -04:00
report	GATK tests use public/testdata not /humgen/ as much as possible	2012-05-24 10:58:58 -04:00
samples	Added function to get founders IDs in SampleDB	2012-04-25 12:49:36 -04:00
traversals	First pass of the asynchronous block loader.	2011-11-18 15:02:59 -05:00
walkers	MD5DB for integrationtest management now writes out a md5mismatches files for clean analysis	2012-06-14 16:42:27 -04:00
EngineFeaturesIntegrationTest.java	More extensive testing of type of error thrown in multi-threaded walker test	2012-04-13 09:23:33 -04:00
GenomeAnalysisEngineUnitTest.java	Allow processing of empty intervals, but warn user when this case is encountered.	2011-10-28 12:12:14 -04:00
WalkerManagerUnitTest.java	Moving more tools over to use the standard VC arg collection. Also, while I'm in there, I removed all of the empty references to @Requires given that it's no longer relevant.	2011-08-10 12:20:18 -04:00