sjia 98076db6b4 Modified CreatePedFileWalker to output PED file given HLA allele names ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1763 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-05 03:06:42 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Modified CreatePedFileWalker to output PED file given HLA allele names	2009-10-05 03:06:42 +00:00
test/org/broadinstitute/sting	A big fix for MergingSamRecordIterator, where we weren't correctly handling the comparisons of SAMRecords correctly (we weren't applying the new reference index first, so sometimes the MT contig would be ID 23, sometimes 24 in different records).	2009-10-02 19:35:35 +00:00