chartl 97e1a5262e -ct x no longer includes coverage in the previous bin ... BatchMerge - additional support for indels (can't just test the alternate allele when it's an extended event, must also specify that you want to use the dindel model when you actually test the allele) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5300 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-24 15:52:04 +00:00
..
core	Few organizational changes, queue output is now categorized and hidden. Also changed NA12878.Wex to dbsnp 129.	2011-02-22 22:49:38 +00:00
examples	Moved the maximum number of intervals check from FCP to the Queue core so that scatter gather will no longer blow up if you specify a scatter count that is too high.	2011-01-28 23:33:58 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
oneoffs	now only accepts intervals files if the user specifically requests to report bams at interval only.	2011-02-23 16:49:58 +00:00
playground	-ct x no longer includes coverage in the previous bin	2011-02-24 15:52:04 +00:00