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gatk-3.8/scala/src/org/broadinstitute/sting/queue/engine
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kshakir 7f25019f37 Inprocess functions by default now log what output files they are running for. 
On -run cleaning up .done and .fail files for jobs that will be run.
Added detection to Firehose YAML generator shell script for (g)awk versions that ignore "\n" in patterns.
Removed obsolete mergeText and splitIntervals shell scripts.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4452 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-10-07 19:08:02 +00:00
..
DispatchJobRunner.scala Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality. 2010-10-06 18:29:56 +00:00
FunctionEdge.scala Inprocess functions by default now log what output files they are running for. 2010-10-07 19:08:02 +00:00
InProcessRunner.scala Wrapping ScatterGatherableFunctions with a facade instead of using slower clone library. Will require keeping Clone's facade code in sync with CommandLineFunction but runs *much* faster. 2010-10-07 01:19:18 +00:00
JobRunner.scala Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality. 2010-10-06 18:29:56 +00:00
LsfJobRunner.scala Wrapping ScatterGatherableFunctions with a facade instead of using slower clone library. Will require keeping Clone's facade code in sync with CommandLineFunction but runs *much* faster. 2010-10-07 01:19:18 +00:00
MappingEdge.scala Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality. 2010-10-06 18:29:56 +00:00
QEdge.scala Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality. 2010-10-06 18:29:56 +00:00
QGraph.scala Inprocess functions by default now log what output files they are running for. 2010-10-07 19:08:02 +00:00
QNode.scala Changed logging level to default at INFO instead of WARN. 2010-08-09 16:42:48 +00:00
RunnerStatus.scala Added the ability to Queue to run scala functions inside the JVM. NOTE: Extend from InProcessFunction instead of CommandLineFunction to use this functionality. 2010-10-06 18:29:56 +00:00
ShellJobRunner.scala Wrapping ScatterGatherableFunctions with a facade instead of using slower clone library. Will require keeping Clone's facade code in sync with CommandLineFunction but runs *much* faster. 2010-10-07 01:19:18 +00:00