gatk-3.8/public/java/src/org/broadinstitute/sting
Mark DePristo 9712fed7a5 Trap SAMFormatException and rethrow as MalformatedBAM exception
-- Trap errors in header and rethrow
-- Wrap underlying iterator in MalformatedBAMErrorReformattingIterator
2012-02-27 13:52:50 -05:00
..
alignment GATKSAMRecord refactor 2011-11-03 15:43:26 -04:00
analyzecovariates No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path. 2011-10-27 14:17:07 -04:00
commandline Bugfix for incorrect error messages for missing BAMs and VCFs 2012-01-23 09:52:07 -05:00
gatk Trap SAMFormatException and rethrow as MalformatedBAM exception 2012-02-27 13:52:50 -05:00
jna Updates to JobRunners from the Queue developer community and from running the WholeGenomePipeline: 2011-08-22 15:13:27 -04:00
queue General improvements to Queue 2011-12-20 14:05:09 -05:00
utils Fix to permit proper handling of mapping qualities between 128 to 255 (which get converted to byte values of -128 to -1) 2012-01-27 16:01:30 -05:00