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gatk-3.8/public/java/test/org/broadinstitute/sting/utils/variantcontext
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Mark DePristo cebd37609c Finalizing new Genotype object and associated routines 
-- Builder now provides a depreciated log10pError function to make a new GQ value
-- Genotype is an abstract class, with most of the associated functions implemented here and not in the derived Fast and Slow versions
-- Lots of contracts
-- Bugfixes throughout
 		2012-06-14 16:42:25 -04:00
..
writer Made GQ an int, not a float. Updated VC code and lots of corresponding MD5s 2012-05-28 20:20:05 -04:00
AlleleUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
GenotypeLikelihoodsUnitTest.java Efficient Genotype object Intermediate commit 2012-06-14 16:42:24 -04:00
GenotypeUnitTest.java Change interface to getNegLog10PError to getLog10PError 2011-11-18 21:07:30 -05:00
GenotypesContextUnitTest.java Efficient Genotype object Intermediate commit 2012-06-14 16:42:24 -04:00
VCFJarClassLoadingUnitTest.java Don't try to share BCF2 yet 2012-05-24 10:57:06 -04:00
VariantContextBenchmark.java Efficient Genotype object Intermediate commit 2012-06-14 16:42:24 -04:00
VariantContextTestProvider.java Efficient Genotype object Intermediate commit 2012-06-14 16:42:24 -04:00
VariantContextUnitTest.java Efficient Genotype object Intermediate commit 2012-06-14 16:42:24 -04:00
VariantContextUtilsUnitTest.java Finalizing new Genotype object and associated routines 2012-06-14 16:42:25 -04:00
VariantJEXLContextUnitTest.java Killing the final versions of old new VariantContext interface 2011-11-18 21:32:43 -05:00