gatk-3.8/public
Mark DePristo 96dbd8df63 Fix a nasty script bug in Queue
-- If you are using user-defined configurations (configureJobFeatures) and you didn't overwride the analysisName of your jobs, and there were other jobs using the same name, then you got very strange errors at the end of your script.  For example, in my script I was using SelectVariants to prepare VCF files, and SelectVariants to generate a useful performance table.  Since I forgot to make a special analysisName for my table commands, the generic SV commands were being included in the analysis group, and these were throwing an error since the special features added for the table weren't added to those SV commands
2012-06-14 16:42:26 -04:00
..
R Add warning message about ratios in variantQCreport, give ratio for MAF > 10% 2012-04-25 12:22:32 -04:00
c At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings. 2012-01-17 14:47:53 -05:00
chainFiles
doc
java Hidden option to SelectVariants to force the genotypes information to be decoded by computing AC 2012-06-14 16:42:25 -04:00
keys Public-key authorization scheme to restrict use of NO_ET 2012-03-06 00:09:43 -05:00
packages Temporary fake release directories for Bamboo testing purposes 2012-05-31 16:04:07 -04:00
perl
scala Fix a nasty script bug in Queue 2012-06-14 16:42:26 -04:00
testdata Bugfixes and code cleanup throughout so BCF2 passes VC -> BCF -> VC tests 2012-05-27 11:17:17 -04:00