ebanks 96b8499a31 Remodeled version of the UnifiedGenotyper. ... We currently get identical lods and slods as MultiSampleCaller (except slods for ref calls, as I discussed with Jared) and are a bit faster in my few test cases. Single-sample mode still emulates SSG. The remaining to do items: 1. more testing still needed 2. we currently only output lods/slods, but I need to emit actual calls 3. stubs are in place for Mark's proposed version of the EM calculation and now I need to add the actual code. More check-ins coming soon... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1821 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-13 20:27:01 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Remodeled version of the UnifiedGenotyper.	2009-10-13 20:27:01 +00:00
test/org/broadinstitute/sting	Fix issue Eric was seeing with java.lang.Error in unmap0.	2009-10-09 17:46:56 +00:00