Phillip Dexheimer 2e78815055 Added missing arguments to GenotypeGVCFs ... - New arguments are nda, hets, indelHeterozygosity, stand_call_conf, stand_emit_conf, ploidy, and maxAltAlleles - Addresses PT 70110918 - To do this, moved those arguments out of the StandardCallerArgumentCollection into a new GenotypeCalculationArgumentCollection, which is now included as a member of SCAC		2014-06-16 08:10:54 -04:00
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src	Added missing arguments to GenotypeGVCFs	2014-06-16 08:10:54 -04:00
pom.xml	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00