Guillermo del Angel 963ad03f8b Second step of interface cleanup for variant annotator: several bug fixes, don't hash pileup elements to Maps because the hashCode() for a pileup element is not implemented and strange things can happen. Still several things to do, not done yet		2012-08-19 21:18:18 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Second step of interface cleanup for variant annotator: several bug fixes, don't hash pileup elements to Maps because the hashCode() for a pileup element is not implemented and strange things can happen. Still several things to do, not done yet	2012-08-19 21:18:18 -04:00
test	Updated and more thorough version of the BadCigar read filter	2012-08-17 17:05:27 -04:00