hanna 96034aee0e Cleanup for Steve Hershman's issue. In the midst of doing this, I discovered ... that the semantics for which reads are in an extended event pileup are not clear at this point. Eric and I have planned a future clarification for this and the two of us will discuss who will implement this clarification and when it'll happen. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3809 348d0f76-0448-11de-a6fe-93d51630548a		2010-07-16 18:57:58 +00:00
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net/sf/picard/reference	IndexedFastaSequenceFile is now in Picard; transitioning to that implementation.	2010-07-01 04:40:31 +00:00
org/broadinstitute/sting	Cleanup for Steve Hershman's issue. In the midst of doing this, I discovered	2010-07-16 18:57:58 +00:00