hanna 95f24d671d Fixed 'visualization' of reads that didn't match bwa's alignments exactly. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1796 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-08 19:45:30 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Fixed 'visualization' of reads that didn't match bwa's alignments exactly.	2009-10-08 19:45:30 +00:00
test/org/broadinstitute/sting	UG integration test. This was the old SSG test with MD5s updated.	2009-10-08 17:43:58 +00:00