ebanks 95e2ae0171 Deal with reads whose ends are aligned off the end of a chromosome. ... Includes update to ignore non-ATCG bases (not just 'N') (Also, create a BWA dir for future work) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1117 348d0f76-0448-11de-a6fe-93d51630548a		2009-06-29 16:50:05 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Deal with reads whose ends are aligned off the end of a chromosome.	2009-06-29 16:50:05 +00:00
test/org/broadinstitute/sting	Some files to support generic genotype outputing	2009-06-26 15:43:41 +00:00