gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio 95b45443ae Updated test according to changes in the AF calculator framework. Changes: ------- * Updated current unit and integration test to use the new API components. * Added unit tests for new classes AFPriorProvider and AFCalculatorProviders. * Added integration test for mixed ploidy GenotypeGVCFs and CombineGVCFs		2014-09-12 14:59:47 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Updated test according to changes in the AF calculator framework.	2014-09-12 14:59:47 -04:00
public	Updated test according to changes in the AF calculator framework.	2014-09-12 14:59:47 -04:00
settings/helpTemplates	changed the GATKDocs format to PHP	2014-08-18 18:04:07 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Now passing in the path to the GATK directory to tests.	2014-09-02 01:40:59 +08:00

The Genome Analysis Toolkit