Mauricio Carneiro 95a4ba57bf Implementation of BySampleSAMFileWriter ... ReduceReads now works with the n-way-out capability, splitting by sample. DEV-27 #resolve #time 3m		2012-11-13 02:09:58 -05:00
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R	Fix a nasty bug in reading GATK reports with a single line	2012-09-10 20:14:13 -04:00
c	…
chainFiles	…
doc	…
java	Implementation of BySampleSAMFileWriter	2012-11-13 02:09:58 -05:00
keys	…
packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Scala classes were only returning direct subclasses (confirmed when inspected in debugger) so changed PluginManager to allow specifying the explicit subclass.	2012-11-04 23:55:12 -05:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00