chartl 7908237b90 Full calling pipeline now calls indels through the indel genotyper, merges with combine variants, and filters on them. Since new genomic annotator is fast, it is no longer scatter-gathered. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4144 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-27 16:28:24 +00:00
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qscript	Full calling pipeline now calls indels through the indel genotyper, merges with combine variants, and filters on them. Since new genomic annotator is fast, it is no longer scatter-gathered.	2010-08-27 16:28:24 +00:00
src	Allowing the Queue to run the GATK via -cp instead of only from -jar.	2010-08-27 16:25:59 +00:00
test/org/broadinstitute/sting/queue/util	Exposed CommandLineFunction defaults to the Queue.jar command line (see -help).	2010-08-11 21:58:26 +00:00