gatk3的最后一个经典版本3.8

Christopher Hartl 95040d95b9 Adding in check for filtered site (Sorry Mark, looks like it wasn't checking the validated rod, only the mask). Also by allowing user to lowercase SNPs, could miss 'SNP_TOO_NEAR_PROBE', now we properly check for that.		2011-07-12 19:21:26 -04:00
public	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2011-07-12 15:39:26 -04:00
settings	Merged bug fix from Stable into Unstable, and resolved merge conflicts.	2011-07-08 15:50:31 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Now deletes the dump directory on ant clean	2011-07-12 08:50:58 -04:00
ivy.xml	Merged bug fix from Stable into Unstable, and resolved merge conflicts.	2011-07-08 15:50:31 -04:00