ebanks 94f5edb68a 1. Fixed VCFGenotypeRecord bug (it needs to emit fields in the order specified by the GenotypeFormatString) ... 2. isNoCall() added to Genotype interface so that we can distinguish between ref and no calls (all we had before was isVariant()) 3. Added Hardy-Weinberg annotation; still experimental - not working yet so don't use it. 4. Move 'output type' argument out of the UnifiedArgumentCollection and into the UnifiedGenotyper, in preparation for parallelization. 5. Improved some of the UG integration tests. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2398 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-18 04:14:14 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	1. Fixed VCFGenotypeRecord bug (it needs to emit fields in the order specified by the GenotypeFormatString)	2009-12-18 04:14:14 +00:00
test/org/broadinstitute/sting	1. Fixed VCFGenotypeRecord bug (it needs to emit fields in the order specified by the GenotypeFormatString)	2009-12-18 04:14:14 +00:00