jmaguire 94e324b844 Write N for the alt allele when we're hom-ref. ... Stop EM loop when we've converged (likelihood[t-1] == likelihood[t]). git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@737 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-17 13:58:11 +00:00
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org/broadinstitute/sting	Write N for the alt allele when we're hom-ref.	2009-05-17 13:58:11 +00:00