Eric Banks 94800771e3 1. Initial implementation of bam writing for the HaplotypeCaller with -bam argument; currently only assembled haplotypes are emitted. ... 2. Framework is set up in the VariantAnnotator for the HaplotypeCaller to be able to call in to annotate dbSNP plus comp RODs. Until the HC uses meta data though, this won't work.		2013-01-15 10:19:18 -05:00
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src	1. Initial implementation of bam writing for the HaplotypeCaller with -bam argument; currently only assembled haplotypes are emitted.	2013-01-15 10:19:18 -05:00
test	Add a test to LocusIteratorByState to ensure that we aren't holding reads anywhere	2013-01-14 16:30:16 -05:00