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gatk3的最后一个经典版本3.8
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Mauricio Carneiro 94791a2a75 Add support for reads starting with insertion 
* Modified cleanCigarShift to allow insertions in the beginning and end of the read
      * Allowed cigars starting/ending in insertions in the systematic ReadClipper tests
      * Updated all ReadClipper unit tests
      * ReduceReads does not hard clip leading insertions by default anymore
      * SlidingWindow adjusts start location if read starts with insertion
      * SlidingWindow creates an empty element with insertions to the right
      * Fixed all potential divide by zero with totalCount() (from BaseCounts)
      * Updated all Integration tests
      * Added new integration test for multiple interval reducing
 		2012-01-03 09:29:45 -05:00
public Add support for reads starting with insertion 2012-01-03 09:29:45 -05:00
settings Update Picard to fix a bug Mauricio found in Picard where Picard unnecessarily depends on Snappy during some usages of SortingCollection. 2011-12-29 14:35:02 -05:00
.gitignore Minor additions to the shared .gitignore file, now that Mark has checked one in. 2011-10-26 12:24:28 -04:00
LICENSE One last test... 2011-06-28 19:18:17 -04:00
build.xml Merged bug fix from Stable into Unstable 2011-12-22 10:49:52 -05:00
ivy.xml Let this one slip through my commits. 2011-12-26 21:55:02 -05:00