gatk3的最后一个经典版本3.8

Mark DePristo 9459e6203a Clean, documented implementation of ThreadFactory that monitors running / blocking / waiting time of threads it creates ... -- Expanded unit tests -- Support for clean logging of results to logger -- Refactored MyTime into AutoFormattingTime in Utils, out of TraversalEngine, for cleanliness and reuse -- Added docs and contracts to StateMonitoringThreadFactory		2012-08-15 21:13:15 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Expanded the BQSR reporting script	2012-08-12 13:45:14 -04:00
public	Clean, documented implementation of ThreadFactory that monitors running / blocking / waiting time of threads it creates	2012-08-15 21:13:15 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Fix an issue with the classpath for external builds in build.xml	2012-08-15 16:08:21 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00