gatk3的最后一个经典版本3.8
 
 
 
 
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chartl 93cedf4285 ---------------
| Added items |
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@/varianteval/PoolAnalysis

Interface to identify variant analyses that are pool-specific.

@/varianteval/BasicPoolVariantAnalysis

Nearly the same as BasicVariantAnalysis with the addition of a protected integer (numIndividualsInPool)
which holds the pool size. One soulcrushing change is that "protected String filename" needed to
become "protected String[] filename" since now multiple truth files may be looked at. It was tempting
to make the change in BasicVariantAnalysis with some default methods that would maintain usability of
the remainder of the VariantAnalysis objects, but I decided to hold off. We can always merge these
together later.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1526 348d0f76-0448-11de-a6fe-93d51630548a
2009-09-03 21:26:04 +00:00
R Updated python files 2009-07-07 14:15:39 +00:00
c Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
doc moved to wiki 2009-07-22 16:35:23 +00:00
java --------------- 2009-09-03 21:26:04 +00:00
packages Added VariantFiltrationWalker to GATK early release. 2009-09-02 02:17:50 +00:00
perl A useful perl module for quick argument parsing. 2009-08-31 15:44:57 +00:00
python Checking in Michael's DoC parameterization script; 2009-09-03 15:07:49 +00:00
scala/src support for scala walkers 2009-08-28 00:15:01 +00:00
settings Switched to Reflections (http://code.google.com/p/reflections/) project for 2009-07-21 18:32:22 +00:00
shell Version 0.2.1 (released) of the TableRecalibrator 2009-06-25 22:50:55 +00:00
testdata change to make build work 2009-09-03 13:43:10 +00:00
build.xml overaggressively removed the STD outputs, back in for tests 2009-09-03 15:07:45 +00:00
ivy.xml Switched to Reflections (http://code.google.com/p/reflections/) project for 2009-07-21 18:32:22 +00:00