mmelgar 939b19e715 Committing the first version of the homopolymer filter. Removes SNPs that occur at the edges of homopolymer runs and whose nonref allele matches the repeated base in the homopolymer. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1373 348d0f76-0448-11de-a6fe-93d51630548a		2009-08-04 14:35:51 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Committing the first version of the homopolymer filter. Removes SNPs that occur at the edges of homopolymer runs and whose nonref allele matches the repeated base in the homopolymer.	2009-08-04 14:35:51 +00:00
test/org/broadinstitute/sting	Tests for downsampling related utilities in ListUtils class that didn't get checked in earlier	2009-07-31 00:09:35 +00:00