David Roazen 4a79831adc Add ability to specify min/max required/recommended values for numeric arguments in the @Argument annotation ... -You can now add "minValue", "maxValue", "minRecommendedValue", and "maxRecommendedValue" attributes to @Argument annotations for command-line arguments -"minValue" and "maxValue" specify hard limits that generate an exception if violated -"minRecommendedValue" and "maxRecommendedValue" specify soft limits that generate a warning if violated -Works only for numeric arguments (int, double, etc.) with @Argument annotations -Only considers values actually specified by the user on the command line, not default values assigned in the code As requested by Geraldine		2013-12-18 18:09:08 -05:00
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commandline	Add ability to specify min/max required/recommended values for numeric arguments in the @Argument annotation	2013-12-18 18:09:08 -05:00
gatk	Fixed bug in the filtering of lifted over variants where a deletion at the end of a contig could cause it to error out.	2013-12-11 14:07:18 -05:00
jna	Fix pipeline tests that were not respecting the pipeline test dry run setting	2013-06-28 15:27:17 -04:00
utils	New VCF engine arguments to specify an alternate IndexCreator	2013-12-03 13:31:02 -05:00
BaseTest.java	Adding Graph-based likelihood ratio calculation to HC	2013-12-02 19:37:19 -05:00
ExampleToCopyUnitTest.java	Add a class-based DataProvider	2013-12-03 13:31:01 -05:00
MD5DB.java	Enable convenient display of diff engine output in Bamboo, plus misc. minor test-related improvements	2013-05-10 19:00:33 -04:00
MD5Mismatch.java	Enable convenient display of diff engine output in Bamboo, plus misc. minor test-related improvements	2013-05-10 19:00:33 -04:00
StingTextReporter.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
TestNGTestTransformer.java	Adding Graph-based likelihood ratio calculation to HC	2013-12-02 19:37:19 -05:00
WalkerTest.java	Throw a GVCFIndexException when the user doesn't specify the optimal indexing strategy	2013-12-03 23:12:14 -05:00