Chris Whelan ba1d23e535 Created a new tool, SiblingIBD, which finds Identical-By-Descent regions in two siblings. ... -When parental genotypes are available, implements an HMM on genotype observations in the quartet. -Outputs IBD regions as well as per-site posterior probabilities of being in each IBD state. -Includes an experimental heuristic based mode for when parental genotypes are not available. -Made a method in MendelianViolation public static to reuse code. -Added the mockito library to private/gatk-tools-private/pom.xml		2014-06-13 09:41:37 -04:00
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main	Created a new tool, SiblingIBD, which finds Identical-By-Descent regions in two siblings.	2014-06-13 09:41:37 -04:00
test	Ensure that output files are specified in a writeable location	2014-06-02 21:13:59 -04:00