gatk3的最后一个经典版本3.8

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Ryan Poplin 9390c56d52 Using MQRanksum for indels was a bad idea according to the knowledgebase. Removing from the ref model pipeline. Indels create mapping quality biases that aren't indicitive of error.		2014-06-16 11:28:33 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Merge pull request #646 from broadinstitute/ks_disable_distribution_with_private	2014-06-11 11:00:31 -04:00
public	Created a new tool, SiblingIBD, which finds Identical-By-Descent regions in two siblings.	2014-06-13 09:41:37 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Fixed GATK docs artifact, moved protected ExampleUG tests.	2014-05-22 21:03:55 -04:00

The Genome Analysis Toolkit