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annotator
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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beagle
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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bqsr
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Updating BQSR RecalibrationEngine to work correctly with empty BQSR tables.
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2013-04-11 16:27:59 -04:00 |
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compression/reducereads
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Updated AssessReducedQuals and applied it systematically to all ReduceReads integration tests.
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2013-03-31 00:27:14 -04:00 |
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diagnostics
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walker to calculate per base coverage distribution
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2013-02-07 16:33:05 -05:00 |
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diffengine
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Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)
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2013-03-12 10:57:14 -04:00 |
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fasta
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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filters
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Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec).
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2013-04-05 00:52:32 -04:00 |
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genotyper
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UnifiedGenotyper bugfix: don't create haplotypes with 0 bases
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2013-04-13 14:57:55 -04:00 |
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haplotypecaller
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Select the haplotypes we move forward for genotyping per sample, not pooled
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2013-04-16 09:42:03 -04:00 |
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indels
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Fixed IndelRealigner reference length bug (GSA-774)
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2013-02-19 16:00:36 -05:00 |
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phasing
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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validation
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MathUtils.randomSubset() now uses Collections.shuffle() (indirectly, through the other methods
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2013-03-29 14:52:10 -04:00 |
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varianteval
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Move some VCF/VariantContext methods back to the GATK based on feedback
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2013-01-29 16:56:55 -05:00 |
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variantrecalibration
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Update MD5s for VQSR header change
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2013-04-16 11:45:45 -04:00 |
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variantutils
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Using --keepOriginalAC in SelectVariants was causing it to emit bad VCFs
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2013-04-05 00:53:28 -04:00 |
936f4da1f6