gatk3的最后一个经典版本3.8

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Karthik Gururaj 936e9e175e 1. Converted q,i,d,c in C++ from int* to char* 2. Use clock_gettime to measure performance 3. Disabled OpenMP 4. Moved LoadTimeInitializer to different file		2014-01-22 22:57:32 -08:00
PairHMM_JNI	1. Converted q,i,d,c in C++ from int* to char*	2014-01-22 22:57:32 -08:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	1. Converted q,i,d,c in C++ from int* to char*	2014-01-22 22:57:32 -08:00
public	Added support to transfer haplotypes once per region to the JNI	2014-01-22 10:52:41 -08:00
settings	Rev'ing the Variant jar to incorporate some patches to the BCF encoder that Menachem needs.	2014-01-02 23:33:17 -05:00
.gitignore	Added support for dynamic selection between AVX and un-vectorized C++,	2014-01-18 11:07:23 -08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	1. Added support for JNI integration for LoglessCaching PairHMM AVX	2014-01-15 11:07:09 -08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

The Genome Analysis Toolkit