gatk3的最后一个经典版本3.8

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David Roazen 932cd3ada7 Fix 3rd-party library dependency issues in the HC/PairHMM tests In general, test classes cannot use 3rd-party libraries that are not also dependencies of the GATK proper without causing problems when, at release time, we test that the GATK jar has been packaged correctly with all required dependencies. If a test class needs to use a 3rd-party library that is not a GATK dependency, write wrapper methods in the GATK utils/* classes, and invoke those wrapper methods from the test class.		2013-12-06 13:16:55 -05:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Fix 3rd-party library dependency issues in the HC/PairHMM tests	2013-12-06 13:16:55 -05:00
public	Fix 3rd-party library dependency issues in the HC/PairHMM tests	2013-12-06 13:16:55 -05:00
settings	Rev picard, sam-jdk, tribble, and variant jars to 1.104.1628	2013-12-05 12:45:32 -05:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Separate tests that access the knowledge base from other tests	2013-12-06 11:31:35 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Changing from scala 2.9.2 to 2.10.2.	2013-09-23 12:42:22 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/