gatk3的最后一个经典版本3.8

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Phillip Dexheimer 931890915f Add the --sample_name argument to HaplotypeCaller * This is a shortcut for people who have multi-sample BAMs but would like to use GVCF mode. Rather than creating single-sample BAMs with PrintReads, one could use the --sample_name argument to HaplotypeCaller to specify the single sample to make calls on * Completes PT 73075482		2014-08-22 23:22:03 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Add the --sample_name argument to HaplotypeCaller	2014-08-22 23:22:03 -04:00
public	Created the stand-alone AC and AF annotation AlleleCountBySample	2014-08-22 20:33:25 -04:00
settings/helpTemplates	Various documentation improvements	2014-07-14 12:03:03 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00

The Genome Analysis Toolkit