gatk3的最后一个经典版本3.8
 
 
 
 
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Mark DePristo 92ac9e7f65 AssessNA12878 now emits a simplified assessment table by default
-- New report collapses the detailed states in the 5 key states: TP, FP, FN, TN, unknown, such as in the following example:

Name     VariantType  AssessmentType           Count
variant  SNPS         TRUE_POSITIVE                6
variant  SNPS         FALSE_POSITIVE               9
variant  SNPS         FALSE_NEGATIVE            1213
variant  SNPS         TRUE_NEGATIVE              172
variant  SNPS         CALLED_NOT_IN_DB_AT_ALL      0
variant  INDELS       TRUE_POSITIVE               19
variant  INDELS       FALSE_POSITIVE              13
variant  INDELS       FALSE_NEGATIVE             262
variant  INDELS       TRUE_NEGATIVE               57
variant  INDELS       CALLED_NOT_IN_DB_AT_ALL     39

-- Use --detailed to see the previous full version
-- Expanded unittests for Assessment
2013-03-05 11:51:38 -05:00
licensing Removing the symlink from the private license file 2013-02-09 12:57:44 -05:00
protected Revert push from stable (I forgot that pushing from stable overwrites current unstable changes) 2013-03-05 09:06:02 -05:00
public Cleaning up hilarious exception messages 2013-03-04 16:52:22 -05:00
settings Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample). 2013-02-21 10:14:11 -05:00
.gitignore Fixing the licensing scripts 2013-01-26 13:42:49 -05:00
build.xml Ant target to package a GATK jar with private included 2013-03-01 15:33:59 -05:00
intellij_example.tar.bz2 Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!) 2012-09-27 11:04:56 -04:00
ivy.xml Brought all of ReduceReads to fastutils 2013-02-23 22:53:23 -05:00