71 lines
2.6 KiB
Java
71 lines
2.6 KiB
Java
/*
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* Copyright (c) 2010, The Broad Institute
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*
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* Permission is hereby granted, free of charge, to any person
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* obtaining a copy of this software and associated documentation
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* files (the "Software"), to deal in the Software without
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* restriction, including without limitation the rights to use,
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* copy, modify, merge, publish, distribute, sublicense, and/or sell
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* copies of the Software, and to permit persons to whom the
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* Software is furnished to do so, subject to the following
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* conditions:
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*
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* The above copyright notice and this permission notice shall be
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* included in all copies or substantial portions of the Software.
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* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
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* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
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* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
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* OTHER DEALINGS IN THE SOFTWARE.
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*/
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package org.broadinstitute.sting.gatk;
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import org.broadinstitute.sting.commandline.Hidden;
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import org.broadinstitute.sting.gatk.walkers.Walker;
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import org.broadinstitute.sting.gatk.walkers.qc.CountLoci;
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import org.broadinstitute.sting.utils.exceptions.DynamicClassResolutionException;
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import org.broadinstitute.sting.utils.exceptions.UserException;
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import org.testng.Assert;
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import org.testng.annotations.BeforeClass;
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import org.testng.annotations.Test;
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/**
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* Tests basic functionality of the walker manager.
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*/
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public class WalkerManagerUnitTest {
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private static WalkerManager walkerManager;
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@BeforeClass
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public void setUp() {
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walkerManager = new WalkerManager();
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}
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@Test
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public void testPresentWalker() {
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Walker countLociWalker = walkerManager.createByName("CountLoci");
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Assert.assertEquals(CountLoci.class,countLociWalker.getClass());
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}
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@Test(expectedExceptions=UserException.class)
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public void testAbsentWalker() {
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walkerManager.createByName("Missing");
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}
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@Test(expectedExceptions=DynamicClassResolutionException.class)
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public void testUninstantiableWalker() {
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walkerManager.createByName("Uninstantiable");
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}
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}
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@Hidden
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class UninstantiableWalker extends Walker<Integer,Long> {
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// Private constructor will generate uninstantiable message
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private UninstantiableWalker() {}
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public Long reduceInit() { return 0L; }
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public Long reduce(Integer value, Long accum) { return 0L; }
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}
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