Mauricio Carneiro 921eaad33f Generalized the default platform parameter in BQSRv2 ... Parameter wasn't working outside of the BQSR walker. It now takes the information on the recalibration report in other tools (PrintReads for example) and treats all reads as coming from the defined default platform.		2012-07-20 17:29:13 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Generalized the default platform parameter in BQSRv2	2012-07-20 17:29:13 -04:00
test	Removed the "Walker" suffix from all walkers that had it.	2012-07-20 17:27:11 -04:00