hanna 9207c58b8f A fix for the integration test I broke on Friday on my way out the door -- ... some workflows using AlignmentContext were working with it in a way I didn't expect and wound up treating extended pileups as base pileups. I'll work to make sure the AlignmentContext interface is crystal clear. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3815 348d0f76-0448-11de-a6fe-93d51630548a		2010-07-17 22:22:44 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	A fix for the integration test I broke on Friday on my way out the door --	2010-07-17 22:22:44 +00:00
test	First step in major cleanup/redo of VCF functionality. Specifically, now:	2010-07-16 22:49:16 +00:00