Mark DePristo 91f3204534 VCF/BCF writers once again automatically write out no-call genotypes for samples in the VCFHeader but not in the VC itself ... -- Turns out this was consuming 30% of the UG runtime, and causing problems elsewhere. -- Removed addMissingSamples from VariantcontextUtils, and calls to it -- Updated VCF / BCF writers to automatically write out a diploid no call for missing samples -- Added unit tests for this behavior in VariantContextWritersUnitTest		2012-09-12 06:46:26 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	VCF/BCF writers once again automatically write out no-call genotypes for samples in the VCFHeader but not in the VC itself	2012-09-12 06:46:26 -04:00
test	VCF/BCF writers once again automatically write out no-call genotypes for samples in the VCFHeader but not in the VC itself	2012-09-12 06:46:26 -04:00