02018ca764
The old BaseRecalibrator walker is and never will be thread-safe, since it's a LocusWalker that uses read attributes to track state. ONLY the newer DelocalizedBaseRecalibrator is believed likely to be thread-safe at this point. It is safe to run the DelocalizedBaseRecalibrator with -nct > 1 for testing purposes, but wait for further testing to be done before using it for production purposes in multithreaded mode. |
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| .. | ||
| bqsr | ||
| compression/reducereads | ||
| genotyper | ||
| haplotypecaller | ||